Scaffold Ga0099851

Basic Information
Taxon OID	3300007538 Open in IMG/M
Scaffold ID	Ga0099851_1008781 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007538 Open in IMG/M

Scaffold ID

Ga0099851_1008781 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4184
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4184

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (50.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	Chesapeake Bay, USA
Coordinates	Lat. (^o)	37.0516	Long. (^o)	-76.083	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Chesapeake Bay, USA

Coordinates

Lat. (^o)

37.0516

Long. (^o)

-76.083

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002738	Metagenome / Metatranscriptome	533	Y
F008128	Metagenome / Metatranscriptome	338	Y
F017987	Metagenome	237	Y
F025982	Metagenome / Metatranscriptome	199	Y
F043890	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099851_10087811	F017987	N/A	ASPSGTPEKCVAWWYAPPADHISDGRFVLLYTNSGAQAPLTHWRTYKPKEIFTQHDAWDLFFNMMEAGYVPFPGTALPQLKSAVKRQ*
Ga0099851_10087813	F043890	N/A	LKPNSINKLKIEVIDEEDGSATIHIEWNENDPDLQWWTDLGEEGQKSFMIDALYEACACYVD*
Ga0099851_10087814	F002738	N/A	MSIDTYGLSSEQYDEFFEDNIRFAAKLYLKTSQVLSEVGAGALDYKTILDMYQETVYATNDDCRRYQKANNPEALKDTDLLGIYPSREELLAEIQSVNVKVEALVDYISRLVETTTKGLEGIAENLVD*
Ga0099851_10087815	F001018	AGGA	VIIVHFKTLKQTSKNFSRTMTQITQAKLNELSVIKLYEHYGALERSLPLLTPESQELAKAELEACANLRSEKVDRIYYAMASHEDALERIKKEGDLITQAKRHHEAQLRSLKGLLNYLRRVLPLDSNKITGRNYQFTLVKKKDLTVEVNSDPEFWHTEERANYCIEEEVTTTKRVVLRSMSGKVLSERTEPKTTTKVLPNLDAIRDAYQNGKQLPLGVRVTQEYSVRSKRIFGEPRMDMVASEYPGQLLPEDSSTD*
Ga0099851_10087816	F025982	N/A	MSCHDHALKDFELQLEMNSLQADMLKENGHVIPYHIDEYEDLEQKKLKLLLGKRFHQNASHAYWYYLQKEKGGK*
Ga0099851_10087818	F008128	N/A	MKTVPVPKLTVSFAVDVEVAYNSFSGKTAEEISESLQDEIHDLLFELDQVTGVYTSCTSITGDD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0099851_1008781

Overview

Ecosystem & Geography

Associated Families

Sequences