Scaffold Ga0099851

Basic Information
Taxon OID	3300007538 Open in IMG/M
Scaffold ID	Ga0099851_1003988 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007538 Open in IMG/M

Scaffold ID

Ga0099851_1003988 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6207
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (90.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

6207

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (90.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	Chesapeake Bay, USA
Coordinates	Lat. (^o)	37.0516	Long. (^o)	-76.083	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Chesapeake Bay, USA

Coordinates

Lat. (^o)

37.0516

Long. (^o)

-76.083

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026437	Metagenome / Metatranscriptome	198	Y
F049595	Metagenome / Metatranscriptome	146	N
F064194	Metagenome / Metatranscriptome	129	N
F067690	Metagenome / Metatranscriptome	125	N
F084181	Metagenome / Metatranscriptome	112	Y
F093803	Metagenome / Metatranscriptome	106	N
F106098	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099851_100398810	F084181	GGAG	MKTKTYDVQIEAIVTKTIRVNAIDEDAAYELAHEIFTVTRDDHEERYEQHTLNIFEVSDEDRNEKPAWERGDR*
Ga0099851_100398812	F049595	AGGGGG	MQQVDYRFENHGSIFLCQPLNGAAKDNLDQACEGTDDFHIRWGDALVIDHRFANDIAQQLIEEGWIIE*
Ga0099851_100398813	F067690	GGGGG	MDKMIELELKLRDGGSYYLCDTKFSVMSGRIRRQINAIEHVIEHYASVNGYAVKHSYEEVVEMIRKAKGVV*
Ga0099851_100398816	F106098	GGAG	MPDVYICMDGVPLWVELKIIKNNRVSVSKSQIAWHSAHNRCGGVSFFLLHDPCQGDLYLFGGASTLDLGASCVSALRPASLYIGSMAGAVRELRACGLAAWTGSFIA*
Ga0099851_10039882	F093803	GGAGG	MSKVPEGFQDWSLDEKSAYWDKQREKDCACRQKGIDKLSQEQRDAVKEAYDAISSAMMSLHECQDLWMSDVKKLDDSMWQLRREFNLEGNDD*
Ga0099851_10039885	F026437	AGGAGG	MKYYIGNIDEQYGEFEVEQTFLFATAGDPDQVMEELAKDWYGLDEHDSDGLPEGMYWNGGMAYGAGRHYEVTKATYDELKDKRVFTEIWREN*
Ga0099851_10039889	F064194	AGG	MRTYLVEINAVVWKQIEVRAESVEAADKLAHELFDLATDGCPEWISLRYDQETKMIWEDDSPNIRNWKEVM*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0099851_1003988

Overview

Ecosystem & Geography

Associated Families

Sequences