Scaffold Ga0099851_1003209

Overview

Basic Information

• Taxon OID: 3300007538
• Scaffold ID: Ga0099851_1003209
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6915
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: Chesapeake Bay, USA
• Coordinates
  • Lat. (^o): 37.0516
  • Long. (^o): -76.083

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004278	Metagenome	445	Y
F009805	Metagenome / Metatranscriptome	312	Y
F020160	Metagenome	225	Y
F033011	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099851_100320912	F004278	N/A	MIQILFRDVIQAIIKWWKRVWFEFKLKARLDMIELENRIESEIEQEQQNKPLYIEHPIDPVLQTGESKKLGGAMELKAPWYDDGLQPPSSNGMP*
Ga0099851_100320913	F020160	N/A	MECRKRLAWTIACERAVVTKEDAVDLYNKIMGEMLATDKRNKYKLNESNKTQ*
Ga0099851_100320914	F009805	N/A	MDIHVISVGEWMNSLMSRMDNAMDGDCFYLPTLMHLHAYNLLKESSFPDKNLKVEIKNAAEV*
Ga0099851_10032098	F033011	N/A	MTSNLTRFYFDFDDECRTGCLANLAFKDVETIEADAYEKELQSQEIEYTRIDF*