Scaffold Ga0099851_1002020

Overview

Basic Information

• Taxon OID: 3300007538
• Scaffold ID: Ga0099851_1002020
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8560
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: Chesapeake Bay, USA
• Coordinates
  • Lat. (^o): 37.0516
  • Long. (^o): -76.083

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006739	Metagenome / Metatranscriptome	365	Y
F008296	Metagenome	335	Y
F009064	Metagenome / Metatranscriptome	323	Y
F022871	Metagenome	212	Y
F046331	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099851_10020201	F006739	N/A	MQFPVYCFDIETDRYNVVSGYEGKALARLQLLEGVEENGDVVTWQDLTTGESRQVVIEQVSFTRMTPPDKRFDGFGGVIEITIRTV*
Ga0099851_100202011	F022871	AGGAG	MSELENAWENDEDFWDFIGQNKRMVGLAISDGQGLDILSALRDIYTTIEESPDSAMRMLTLLGITIYASSIGEGKKFTDEIQITAAMEQFDTSIKEILDEESK*
Ga0099851_100202016	F046331	AGGAG	VSHSEAPISITIKTAAGSLVTVRAENGTELDTTVAEGLDAITSATMELEKAIRGAIPTPMTVGQVASALGASISPIDNSTTTLGGRNCPHGKMTAIQGTGKDGSMYRGYFCSAPKGAFDKCKNVYLKTSDSAWNTFVLDQVK*
Ga0099851_10020206	F009064	N/A	MSIIVNLSKDEVRVCTLLAVERWLTKFGSKDKPNYAQGKIDGKLEPEINANIRANVCEWAVAKQYNLGWNTPWYPNALHAKRYPISDVGNNLEVRSIRTQTSIAFWGKDRGKIIIGTKCLDAEYYSEVEIYGYINPDNFAKEQYYDSYINGWRVPITEFKEYDVKTI*
Ga0099851_10020209	F008296	GGA	VSEAWVQEYDLLVSSLASEYFKRYPMLDAEDIRQTLWMWFVTHPVKYKEWSKLPDKDKEKLIAKSLRNAAITYCEKEKSAKSGYELADLYYYDASVVEAFLPSIIAGSYELPNKIKDLNFKFGKGEVSDGNNWLVLRSDIEKAFNQLAEAKQNILRIRFTADNYEWTTMAKELNTSADGARKRVERAINSLIRILGGWRTYTDVDTVENNTEDNDDRTES*