Scaffold Ga0099851_1000589

Overview

Basic Information

• Taxon OID: 3300007538
• Scaffold ID: Ga0099851_1000589
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15243
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (55.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: Chesapeake Bay, USA
• Coordinates
  • Lat. (^o): 37.0516
  • Long. (^o): -76.083

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003213	Metagenome	500	Y
F018918	Metagenome	232	N
F028783	Metagenome	190	Y
F034555	Metagenome	174	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099851_100058914	F003213	N/A	MTSKKINKAKRQISDQTTKGGLIGLMIYGLNKQGADPMFISLLVPVASSVLAWLSTKIGDPDLACLFIPNDDDPQKN*
Ga0099851_100058915	F028783	N/A	LTRPYTVFKAPVVKAPLEGTDEFIRQVIKRAGGSLWNNGSFVIRDIRTKPGQISNHARGLAVDFSYRKMNDKGITDGRKTAMPFVQKLLRNADKLGIELVIDYQLNRSWKCDRCTWIKGKWSGGDWFHIEISPAMANNANLVKQAFSDVFKDMPKTV*
Ga0099851_10005894	F018918	AGAAGG	MAVYSVKQKYLTDNYAVVVLVTNADPLEVGQSVTVAGVDATFNGTYTVEALPEYYFNGVDEQGFFLYDIELPIANQVLYAKTADNVNIVAASGSLTTTPVCTWITAAQIEDWLGIGTATAADTAFLTQCALAANNFCYARRREAGYKNESLTTVPNGAVSLGTIMYGGALYRQRGGVQDFASFDGLGTANSFGLSPMIKQLLGVDRPAVA*
Ga0099851_10005899	F034555	N/A	MSNPKLVLQIDGIKETLAELNKYDKVYRRQVTKDIKGAGAPIINTARQLIGDVPPLSGMVRGKLIKGREVYWTNKTAKAGLKIKVGRRASKGGTVQFKDKFDAENNPRESHSVTFKARPYQLMVAQQMDAAGAIYDHAGIKTKNTNFVNNLNIEVGSQPRAIDPAVQQHRETVQFAVKRIVDEVAKTLNKKLKVRYGN*