Scaffold Ga0099851

Basic Information
Taxon OID	3300007538 Open in IMG/M
Scaffold ID	Ga0099851_1000450 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007538 Open in IMG/M

Scaffold ID

Ga0099851_1000450 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16974
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (75.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

16974

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (75.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	Chesapeake Bay, USA
Coordinates	Lat. (^o)	37.0516	Long. (^o)	-76.083	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Chesapeake Bay, USA

Coordinates

Lat. (^o)

37.0516

Long. (^o)

-76.083

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F003112	Metagenome / Metatranscriptome	506	N
F039992	Metagenome / Metatranscriptome	162	N
F081071	Metagenome / Metatranscriptome	114	Y
F086661	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099851_100045011	F081071	AGAAG	VTAAEYIEASGVPESMWPNFREWLDWHANRGLVGVAKEGDKIAGVAVARCVRGFEPPEPYEHTEGGDAVFVDLTVTSLDGISNALSRKALKCLLSILWDRFGPRRRITFKRNGFYKEYDYYTFMRKALN*
Ga0099851_100045013	F000635	N/A	MTLSEIAQYAGEKVGKTDSETLDFLQKSASLNYRRVWNFAPWRETITTSTYSVGTSRTVTLGSNVETPLSIAYNKNEVDPIDLSTIISQDADLLEEARTGDPQVYHFKGRNSSGIAELDLYPRLETAGTTPLRVVEKLRCLTRANYIVDFPPSSDAINDELRLPHVHHVVLALTHADALERERQYAKAQSVVQTANADLAAMANYELSQVGGIKQITPVGLGDLSIEEITAA*
Ga0099851_100045017	F039992	GGA	MSERLARMEERQVTLIGMVERSLSSFGDLSNRVNALEHLKTKMLLVAGGIGAIVSVVWDAIRSRLTHGG*
Ga0099851_100045018	F003112	GAG	MTRKEYVCFKEALRFAGENNTVARETKYIGKVKHLLSVNRSIKRIVEEGRDRDEIVDAVVHLAVALKYLEGKGRES*
Ga0099851_100045019	F086661	GGA	MKNEIYHNGVLISVQDDRTLNEAKEIKIGMARHYYSDAISTAGLDSITQQNAALGIYPPERCEAIKSYIAACRNEYLRCKAMILAAQTNDEADAVQFVAPATPEGI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0099851_1000450

Overview

Ecosystem & Geography

Associated Families

Sequences