Scaffold Ga0105502_1000013

Overview

Basic Information

• Taxon OID: 3300007531
• Scaffold ID: Ga0105502_1000013
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764224817 reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 233661
• Total Scaffold Genes: 225
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 196 (87.11%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F089057	Metagenome	109	N
F092229	Metagenome	107	N
F095629	Metagenome	105	N
F095631	Metagenome	105	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F103435	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105502_1000013113	F092229	AGGAG	MNKEYRFNHIPEVVLRNIRFIRDNNIDIGTGDDVLECMMDINPVVRTKIYDDYEFAKDVAERRFGSTIEKLDLRTVLQKCITRPYNSILNNIYFRYFNSELIDDLFKLGQSSKVLDLAIKYECEYYTVNAAKTNIRRYNTDAYYNKFAADSNIISSHRSLHDPQVNAVKSAEFTYDLLMASRAEEFNPEIVREIFVKYGLKPNSSRNLYNRINDNLNLFYYIEDYLDEYREEGRFIYGTKEYKILKELRSLPLMVVLTQLTRKNDSGYILNSNLELVKG*
Ga0105502_1000013132	F099453	N/A	MLRRKDMNRFDIIELAQQTLTFVYNTFNGKVNTLDPYTRLNFVSGYLDTKTNIARTTPYGCIYVSLEAFADTVERQGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYREEVELKCVKQSCQWILDNIQYIRSLGLVVIPEVYQARLANLTNVIYTPKYPIAIAMAKLEYMLGRKFREFSNNNIEIQYIDRLKTHYSFMVCENRSYINSRNLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGA*
Ga0105502_1000013134	F080166	N/A	VNILANFENYNKVVEQIFELNYYLTFKLEVTFNTTHKKINTEIKENFHSEYVVGANKLTTNLRYKYQMRLSPRGEKIGIVIDWDNYDDLCTVVEEAINICDPENKMSPFKRLYSTTGDLLDIKCDSLKVRYLHLEDRWNNKVDLIPFVLVDDNRGTLTEAMRFRFNNELTFDVPVSRLKGFRRFLMTYNPVLHAGAMARYMAITPLLGSNRQNMLK*
Ga0105502_1000013135	F081455	N/A	VLFKAKEKHIMEPLGKKSTKLMKEVLDNIILKSKKDIPPVEEIGAETVDIIDAAEEAIQQPLQNTDSSIAVNFSQMVNNPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVNYDSFIKIKESNTDKVVRAVRLLNYKMSDQNAAAAFAQFVSEFNPECNPNKRLRYELIRHQGREKDLVIRLSTVINGKTKYYADIYPDLNKIDLDHHLISSAKK*
Ga0105502_100001316	F099452	AGG	MDKTYAELLQETLSKIYELKDLNNKDRGKALTIFIGERLNRELLLSSMNIFNLYKEIVNLDDVSLLNDLRKTPWYKDWFIDDKRNSDLIDLSKFNFRSLERFEKESYLKDVEHYDFKKVIEVDSYSLYDTLVEDNGVELFKLAAENILINHGFFNNTDYNLYDIPDKYMEDIEVSLYMCLLNSGNMDFMDKKTFKSTELFYIVKNNICGTIFFTLFDRMNEDTRTRAR*
Ga0105502_1000013164	F095631	GGAGG	MASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYMGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELILNTVSDTFKFDRNIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYTTFHKTIITTNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGINNFCNYTYIDSSTIRVMFDNSSYLPTANTEVTVNLYTCQGSNGNISYKDSIYFRVKSEKINYDRLNLLVIPTSDAQYGIDKRSIADLKKLIPKEALSRGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNIIKYDGITNASVAYQSSEEELNNARKNQFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFVANKMNWYRHYLSERDTYVGDISIMQNIQSDIGLVHRDDPYDPEKITGVDVKVLAVFYSDEKYQVPYRWAEAEFVNYDQNTFIMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMNMKIFVFAKDVFGYNAGLHKADQIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKIRKQDNGQISYIIDRVPVISYDYVNTEERIQDFINNLEKKRIHILECLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLTEYIKNDIRKYIEDKSRISDIHIPNIITFITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA*
Ga0105502_1000013192	F103435	GGGGG	MKFVFTTEPIYQYYRAYLYPSDKDKLDKDLMIEYGDYKDYWDLKQQQDALPENIFVAELTSRDYPRNPWNYVSQLISKLTYSYLIDNPEFENIFSEILFNQSEEEFYEFYKAIDRFYNGSEIFIIVNNDEYSDMVTQMMCNVIRRTYGIHPQIIYDMDDVYNIRDDIDFSPQGAQLAYLQRAAYYKLEAKKNFEPLQIWYPFDMNTYTNALE*
Ga0105502_1000013199	F089057	GGAGG	MINVIPLIAKKYNRKGDTSGSLKSLISDLNCVTDNDDVLLFLSSIPRETKYSLDDAFDIIVSDDTYSNIFRATLVFLNIDLDYHRLLLNAIKSESYTIICMINKAIPTPDLFLAKNNYECLTIALDKSYAVFDKVLGMVIGQIKHTASSHEGRALGIFMTICILNKDIDKLASLCTGYLATCRSEYMVKDLMNKSAMDAFQYMSEEDIHTVVDDINSRTVLSRYLNKM*
Ga0105502_100001383	F095629	AGGAG	MRELIICACLLGCFGVANANNVEQPKEVKIVHNDDSVVLHKKIYQLEKRVERLEELLKKEGK*