NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105052_10385005

Scaffold Ga0105052_10385005


Overview

Basic Information
Taxon OID3300007523 Open in IMG/M
Scaffold IDGa0105052_10385005 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-03
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)920
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Fryxell, Antarctica
CoordinatesLat. (o)-77.605Long. (o)163.163Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000292Metagenome / Metatranscriptome1357Y
F019786Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0105052_103850051F019786GAGMGKKDKIGNEAFRWARAKVFNHNKTSVGRAIAFGCATRCHLSVHSLAMPRSGPDDASHGGGG
Ga0105052_103850053F000292N/ALTRVMRAAVPIPAVAAASVLHSAAVGGSVVGVVGPL*

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