NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105053_10738125

Scaffold Ga0105053_10738125


Overview

Basic Information
Taxon OID3300007522 Open in IMG/M
Scaffold IDGa0105053_10738125 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)735
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Bonney
CoordinatesLat. (o)-77.714Long. (o)162.445Alt. (m)Depth (m)83
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074027Metagenome120Y
F087752Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0105053_107381251F087752N/ALTTRKAVFVVEKRVSSPEILPRFGGVGASRQHNRKEKLCSLSLGLTTLSGEVNA
Ga0105053_107381252F074027GGCGGVLPGKINAMKNFAHCYWGLTTLSGEVNVRFIVLLSLFDRTQGLVRVEKACGQS*
Ga0105053_107381253F087752N/AVSLTSRKAVFVVEKRVSSPEILPRSGGVGASRQDKRNEKLYSLSLGAYHTVG*

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