Scaffold Ga0105053_10195791

Overview

Basic Information

• Taxon OID: 3300007522
• Scaffold ID: Ga0105053_10195791
• Source Dataset Name: Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1954
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Bonney
• Coordinates
  • Lat. (^o): -77.714
  • Long. (^o): 162.445
  • Depth (m): 83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014945	Metagenome	258	Y
F024486	Metagenome / Metatranscriptome	205	Y
F098707	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105053_101957911	F014945	GGA	MGKFIGIGAGALVEKDGQVEGLGGLVQVEGKRRRATHV*
Ga0105053_101957912	F024486	N/A	MEKKSYQTAASKPNPKWERRRIRKEAKGCQYAGKRGGDRATSNAL*
Ga0105053_101957915	F098707	N/A	LPIPSCRQSVTQRCLLKNPSKSTLAHDAVAAAVLHKHHPIISIGAGLIQFVYDLRSRLANGGYPSEKSISAIFSREFSCPFA*