NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105044_10051350

Scaffold Ga0105044_10051350


Overview

Basic Information
Taxon OID3300007521 Open in IMG/M
Scaffold IDGa0105044_10051350 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5050
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Fryxell
CoordinatesLat. (o)-77.605Long. (o)163.163Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009468Metagenome / Metatranscriptome317Y

Sequences

Protein IDFamilyRBSSequence
Ga0105044_100513501F009468N/AMFGFGKTNRDPLADFRAAEKWLISFPVGDPLALHPEVIAELGRMAEPAAKRSPQRLEAIYYVDAQCTNLRKNLTAQYIEHSSRSSKIEHQLWSALFDLTQAFLVTYNTFALEMSHHQQSAKWQQLLPELVGRQIIHMGLDAKIRLYRYEQWIPAKWSELHAHFTLACSRQIERQQLVVGPGGHATTIEHEFLVALLLQLMNAGNMTARHLEWVAGELDE

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