Scaffold Ga0105055_10082728

Overview

Basic Information

• Taxon OID: 3300007519
• Scaffold ID: Ga0105055_10082728
• Source Dataset Name: Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3378
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Bonney
• Coordinates
  • Lat. (^o): -77.714
  • Long. (^o): 162.445
  • Depth (m): 83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013136	Metagenome	274	Y
F020853	Metagenome	221	Y
F034073	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105055_100827287	F013136	N/A	MSNVCVFFCLACIIFLSISIFRTKNIINDASIYLDLFEDLDKVDDVYKNKFVLSLFFTDTKNKTLLLGNNNIGMSIDNKIDNRFSIENKKLRH*
Ga0105055_100827288	F020853	N/A	MLSNHDISSLVTKMGISDFCGCFYKDKLKPIQPNSSYIINLNSELDEKGNVNSGSHWTCLVTDDLKQAIYFDSYGEKKKQMKLGTY*
Ga0105055_100827289	F034073	AGGA	VYDTGTEMIGNKRHLGGLSDALKKSKKGIISKLTQLSGLGLKLGDGVMKDARYRRPITMGNGMRMRGGGGACKGCGMEYNDKFVFSNVAL*