Scaffold Ga0105055_10066023

Overview

Basic Information

• Taxon OID: 3300007519
• Scaffold ID: Ga0105055_10066023
• Source Dataset Name: Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3846
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Bonney
• Coordinates
  • Lat. (^o): -77.714
  • Long. (^o): 162.445
  • Depth (m): 83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002264	Metagenome / Metatranscriptome	576	Y
F014945	Metagenome	258	Y
F076905	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105055_100660231	F014945	N/A	MGKFIGIRAGAVVEKDGQVEGLSGLMQVEEKRRRVTPV*
Ga0105055_100660234	F076905	AGGTGG	VGAPDADNEGADILADKTISDPKVGIEWCQRTNRAVFTLKKPCRKAGKVTYQDRHSTFDNSVRDAIWRGAAENEVQKHEERLTGAWRQMSTFWRRYEKWRKGDDVEDCTHKQRYEASYQSMVKVLQQNTWIDYSKFLKSCVRARAEQGNINQPAYGTWTADFMLRQNESRAFLGKYLNDLRVPCRQKRREMMAIAGIIPVAKWLAKIKQRSDVIGRLCKWAQEP*
Ga0105055_100660236	F002264	GAGG	VAAPEWTFEKMNFVAGRRGAVVEYDFYNKLERLNVQAGKRDKILVAHVQRICEAHDTVMRSFYQQIHGSSEADATTSMENIGEQVYV*