Scaffold Ga0105055_10036218

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105055_10036218

Scaffold Ga0105055_10036218

Overview

Basic Information
Taxon OID	3300007519 Open in IMG/M
Scaffold ID	Ga0105055_10036218 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5405
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location Name	Lake Bonney
Coordinates	Lat. (^o)	-77.714	Long. (^o)	162.445	Alt. (m)		Depth (m)	83
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019727	Metagenome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105055_100362182	F019727	AGAAGG	MEDDDMQSVQYDPQVAMCVCACVTLTSYTIFTQSFKVVKGTSKSLTDELRIVMRTTDIPVGKDSKFTWREMWEIDVVSIMKKDFIEMDKDRSKYGCLPKMATCSKGSSGSLWASSFCERTNSCANRILTLLGDGKMEKLVIGRNNREFVVFMRNHYSRVPDEQFEVEILIIVAEDNEKEEDK*

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