Scaffold Ga0105055_10015670

Overview

Basic Information

• Taxon OID: 3300007519
• Scaffold ID: Ga0105055_10015670
• Source Dataset Name: Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8892
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Bonney
• Coordinates
  • Lat. (^o): -77.714
  • Long. (^o): 162.445
  • Depth (m): 83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002972	Metagenome	516	Y
F027750	Metagenome	193	Y
F068476	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105055_100156701	F002972	N/A	PLVVNGVVVGPFEEEEEGTGVASDVVKVEGEDPDTPGPLS*
Ga0105055_1001567012	F027750	AGG	MVAIDMESASEGEVEASLEFLNISSTLDTAQNLEEMR*
Ga0105055_100156708	F068476	GAGG	VGCDVIFQFLCSVDTKVSGIEVWFVGGVVGVCGESVEKLLKLILIREDVDASQVESVIIQGGGE*