NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105055_10012897

Scaffold Ga0105055_10012897


Overview

Basic Information
Taxon OID3300007519 Open in IMG/M
Scaffold IDGa0105055_10012897 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10099
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (52.94%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Bonney
CoordinatesLat. (o)-77.714Long. (o)162.445Alt. (m)Depth (m)83
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003538Metagenome / Metatranscriptome480Y
F036558Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0105055_100128971F003538N/ATSCPIGMSLPADSSCEGRVSLHFTQLGLSMPAAAGVVDEKGSEYILAHTGPRELDGHPLGGCGSGFGLVPGYTTL*
Ga0105055_100128974F036558AGGMWKKDHKRSDANHIVWINLIQSNTTHCAKLGLMRVQKSYIDASSAQVTAPGLFGGFSFRGLKKLKGGDS*

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