Scaffold Ga0105055

Basic Information
Taxon OID	3300007519 Open in IMG/M
Scaffold ID	Ga0105055_10010941 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007519 Open in IMG/M

Scaffold ID

Ga0105055_10010941 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11266
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (9.09%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

11266

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (9.09%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location Name	Lake Bonney
Coordinates	Lat. (^o)	-77.714	Long. (^o)	162.445	Alt. (m)	Depth (m)	83
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Bonney

Coordinates

Lat. (^o)

-77.714

Long. (^o)

162.445

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006069	Metagenome / Metatranscriptome	382	Y
F024033	Metagenome / Metatranscriptome	207	Y
F062908	Metagenome / Metatranscriptome	130	Y
F071403	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105055_1001094110	F062908	N/A	MDISNTHQNLFGVIDRTYMTHAKPIQKGVMSMNYTGLIHARSNANYPHQKYNQLDIATHIGCIGKANSQRSDLPTPLIKCKPRHNEAASRFNYAYDSQITTKPTEISGVNIPNNQLRIIPNRGTQLCYQKTIMPINQEIMNLSRNIIGVCGERADTLANENLQFKASRQRLTRDELQGLAKIPAPAVP*
Ga0105055_100109414	F071403	N/A	MYNINSKNNEFDIITPDDTVRKTIPEGNYSIKTFMTQLKTLMGNNLITIVYNDAQNTYTFAKSFELTETYKIKPISIGKLIGVSDNLEYEISTSGYTTGLINLINYNKVMIRTENVAYYYSNVENIRTNNNSVFNSNIIFWKSKADTEPFKILKYNNEDGGNSFVYKVENRQINSIIFQLRNERNEIITDAPDYMMVIQYNFYEKRDIINILVSIDNIIKEMYNTILFAINRLKLLL*
Ga0105055_100109416	F024033	N/A	MDDIEKDILLRQAQILYPDCEPWVMDLAMEAYFNSLKSPVVEETMVEEN*
Ga0105055_100109417	F006069	N/A	MIIEKKLKGFDNKLLYDKLNYPQCSCGLCPKFFFNSLHVGARGSGKTYTVVQMIKHYEKHKITREGVGYKLRTHLISPTIQANEIYQSLDSLDMEKDAHDNYGDQLLLDIIEDIKAEKAEYEKFLLYKKSFEIFMKTPESKYEKLYDSDPEIFHLLEEYDYIHPRDFKHEQPKVNIIILDDLLGSNAFTRKTQSVLTNAMIKNRHMQIVFCVLVQSIRAVPKTIRMNCSVFQLAKFGSKKVVLNDIYEEVSNVTTIEKFEELYDFATSKKYGSLIIDTTNGKRFLSNFNSELFITDDKIKI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0105055_10010941

Overview

Ecosystem & Geography

Associated Families

Sequences