Scaffold Ga0105045_10003854

Overview

Basic Information

• Taxon OID: 3300007517
• Scaffold ID: Ga0105045_10003854
• Source Dataset Name: Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-02 (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12974
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (68.18%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Fryxell
• Coordinates
  • Lat. (^o): -77.605
  • Long. (^o): 163.163
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005661	Metagenome / Metatranscriptome	393	Y
F006886	Metagenome / Metatranscriptome	362	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105045_100038547	F006886	N/A	MLSQDFDTSEFDYLNAGNFAQAEQQPQSKTTEITNIERFWNLTGNWGEFGSYFGAGLSASLVVRAIPALIPSAVILIPASALGLGLYALSADGPSKVRSQLILIAVATALLAGNWDAWQAWILANSQLLILSFALIVITLVFVGTQVWSKLSNVNQ*
Ga0105045_100038548	F005661	AGGAG	MDFRVAKTSGSPHIASEFGYDPRKHGNLTPEIVHDAGRMAKVLDLQKQLASAMNRHLAKIYANKVEIERLTLEAIETGLTAKAEIDKYVSKAVIAGAKHESHIATLEHKLQHELGLIKVKEASTNTLANADFRQRLLLIKANHQAKGQIQEHGFTQSLRVIQASPRQAITMQNRREGFNAYINAKDFDPILATAGNSGDMSPIGAGNSKGFLGGLFDFFSGKK*