Scaffold Ga0105050_10093148

Overview

Basic Information

• Taxon OID: 3300007516
• Scaffold ID: Ga0105050_10093148
• Source Dataset Name: Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2006
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.605
  • Long. (^o): 163.163
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007072	Metagenome	358	Y
F075727	Metagenome	118	Y
F077915	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105050_100931482	F075727	N/A	MMNKMNKKGWVARDFIIAMLVFSGVLALFVVMIGSLANEYGNNEVISPEFSQKFDKFSENVDAGGEMWSASSGEGGLSLVGTADLLFFSTFKVISLVFDSVGLAWTQLAEFGEFFGIPSVISNIFVGLIFSILTVMIVFIIISSVRSGREL*
Ga0105050_100931483	F077915	GGAGG	MAVTDYYVAPTGNETSGLFELSKYVGISATAGLFWPVMLLVIWIVSFLGFKQYSSSRAWTFASFFCSILGIFLAVLNLMNPRWMYLSIIMVLIGLVWLKLEAQ*
Ga0105050_100931485	F007072	GGAGG	MELSKLGKKAQLSLGDAPTVVLLVGLVFLVMATIAFIGEKYQGSLTENSVAYNVTGDLQTEIGNNTSIAGIILTISLVGIVLTILIGVFIGVRGGTSRV*