Scaffold Ga0105050_10090276

Overview

Basic Information

• Taxon OID: 3300007516
• Scaffold ID: Ga0105050_10090276
• Source Dataset Name: Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2047
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.605
  • Long. (^o): 163.163
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003212	Metagenome / Metatranscriptome	500	Y
F029046	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105050_100902762	F003212	GGA	MKDKWMVTIEIDTYDGDPKSWHWDIIFTGDDDIKVISSEFKGRVLPEGDGE*
Ga0105050_100902763	F029046	AGGAG	MRVAICECGRELMQLKEIDTLQDLKEWVEENMPSASVREDMYGTLVIHTNLVSTMGGYLYESEGE*