Scaffold Ga0105050_10013770

Overview

Basic Information

• Taxon OID: 3300007516
• Scaffold ID: Ga0105050_10013770
• Source Dataset Name: Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8233
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.605
  • Long. (^o): 163.163
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005072	Metagenome / Metatranscriptome	413	Y
F042096	Metagenome / Metatranscriptome	159	N
F047923	Metagenome	149	Y
F070140	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105050_100137701	F070140	N/A	IRKARFMQGVKESEKQNARKDTETKAKVVEIASKVAREDKRKD*
Ga0105050_1001377011	F042096	AGGAG	MAGSDITANSTSTTGSNVALFGGPTRLKAFIITPTAAAGSVVFADNDITKFAVTTGASADSGPINISLPEMGVKFDTNLQVNLTNVGGITAFYA*
Ga0105050_100137702	F047923	GAGG	MGVTPGEVRQAKKFLENNKISIKYVKPNLFAIASNGLKKNFTETLNYFQKGTSGTIDSSDQKKD*
Ga0105050_100137703	F005072	AGGA	LIQAIKKKIKDHKQELSQNLLGKGVEDISEFKRVYGYGQGLDKAFNIINETIEKYKKGGELEEDDQ*