Scaffold Ga0105050_10010455

Overview

Basic Information

• Taxon OID: 3300007516
• Scaffold ID: Ga0105050_10010455
• Source Dataset Name: Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10154
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.605
  • Long. (^o): 163.163
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019396	Metagenome	230	Y
F023291	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105050_100104553	F019396	GGA	MVNNKWEPYLKLDTNGLPCMAQQTYEPLVSSDGKTFCKNYSFPNEYQYMNSADRPLYTTEVVNWFWSNELMWIEHFKDKPYAPEILDIDLINKRIYIKWYTESCNQIIYSGKDWPQQHWRKQIRDIIVDQYNEGVYKLTMYPHCHYISDDGNMRAIDWYGCVPVNDPYIEEKYMQGIIHETAQFRLDETGKPLDGKLNLEMMFERSLSTHVMWGNHNMNYIYDEIFTRVTNA*
Ga0105050_100104556	F023291	N/A	MQLFLNPDWKRIGISLSGGADSALLAYLILKETDANIYFTTQIRMWKTRPWQRYVALGVVEWFRNRFDNRIEHIEGFIPPELEEPTSPLITDEYGAAKPGNRIILRAHNEWVAHTYNLDAWFAAVNKNPNIAIPGALAERNNGVLPLHMVHMGVDILHPFVLTMKDEIIKQYYENNITELLNITRSCEGEFSGLDYTTYTPGQFVPICGNCFWCKEREWAIDQNK*