Basic Information | |
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Taxon OID | 3300007516 Open in IMG/M |
Scaffold ID | Ga0105050_10009220 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11117 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Microbacterium phage Shocker | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Fryxell, Antarctica | |||||||
Coordinates | Lat. (o) | -77.605 | Long. (o) | 163.163 | Alt. (m) | Depth (m) | 18 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F048914 | Metagenome / Metatranscriptome | 147 | Y |
F097116 | Metagenome / Metatranscriptome | 104 | N |
F100939 | Metagenome / Metatranscriptome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0105050_100092201 | F100939 | AGGA | MYRDTSSMGNRLAPQKAAYGDSEEMKKKARERAMMNRLSSVPGQASS* |
Ga0105050_100092205 | F097116 | AGAAG | MSYSPPTKTVGDVYAQVKRAFGDESGVQLTNDDIARWINEAQTDIAVQNQVLQATDTMATVAGQATYSLAAISPPIDSIASILLNGRRIGNIPISQAEESISLADPEGLEIGAPQFWYEWAGKIIFWPTPGQVYTMLLRYTAEPTLVTTSVGDLLAVPDDCFTDVCNYVLMRAYEMDENPEMVAVKQAEYSSSVAERGETERQAATMTYETTITFELY* |
Ga0105050_100092206 | F048914 | N/A | METYLGQSPSVYNSDLGEFVSDDHVRFAQVLKDLKPTYSLVYIPVSKRATPEEKKHPWAIMDKPDNLSEYAVRFLSEEDMKAPHKVIAWLFDGDVVRHGAKNILKRIESEENAKKLLDFKRQEDDLEDRIEYGAFLINGGRNKLHTVKHDGKKFER* |
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