Scaffold Ga0105050_10000670

Overview

Basic Information

• Taxon OID: 3300007516
• Scaffold ID: Ga0105050_10000670
• Source Dataset Name: Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52300
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (68.12%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.605
  • Long. (^o): 163.163
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055453	Metagenome	138	Y
F071209	Metagenome / Metatranscriptome	122	Y
F078676	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105050_1000067015	F078676	N/A	MQNLTADLQYYVCYASSPGAFTDPNPNPPASQEIIRLMNIQVTGNPLDESQKNFEVLLMSIGLRAMPVVLSDPYAVIELADLTQELSGEGFVWKFAVERGVQFFNFTPYGTPGPVGLLVDDLNGVIIPSGVRVTTVSGSPTGWAKNTVFSRMQSV*
Ga0105050_1000067062	F055453	N/A	MKLKDILLESPTDVVARFYIEASAASDKFYNPEDVKYKEKTSAYYKEHFDSWFKEGKVPVFEKPTDLVQPEYTNEPKQGKLQSPGFRGLQYALAAAGLPYNHKLQAYEPNAAGIVATPTMDAAQNNNGQ*
Ga0105050_1000067066	F071209	GGA	MDKHKYIPMNNLVKDKKTEWTFTHLNMEYIEIAKHGIVMWCIENLEGRWTMLGGNKFAFEDGEDATLFKIQFGFGVS*