NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105021_1221034

Scaffold Ga0105021_1221034


Overview

Basic Information
Taxon OID3300007515 Open in IMG/M
Scaffold IDGa0105021_1221034 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1015
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD8-C175(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)143
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014744Metagenome / Metatranscriptome260Y
F057285Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0105021_12210341F014744N/AISIGDKRPNKYYSKEYFVTVKYQVTDLNNPKKKYGVIVAGMGAKPIELNVDRELLPTNYFTWESFDEVLFERLARWQNSINQEGYYPKDRDTGQVVVKDNNLKGDKQCL*
Ga0105021_12210343F057285AGGAGMSKSKGLIFTINTRNKSYNLLEQVYKDFGVVFHPKTTVDSVANFVKEKKQDAKATSETSGKVRQDNSERTGLVGKAEKDKVQQKSFSMEDTQRKISSSFSNLKRER*

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