Scaffold Ga0105021_1180008

Overview

Basic Information

• Taxon OID: 3300007515
• Scaffold ID: Ga0105021_1180008
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1190
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F022974	Metagenome / Metatranscriptome	212	Y
F039176	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105021_11800081	F000615	N/A	MCRIRCFYEGFDGKLSWAEIVMSYEDDIAGMIKHWSCGGKRMVTTEHIEIG*
Ga0105021_11800082	F022974	AGGA	MENNETYYIAKLSKKGEHLSSEIHETLDAARLWAMKETKLLVSDTFLRKCKADDIVVEIDEHFFGYEISSEELLKNSERVL*
Ga0105021_11800084	F039176	GAG	MIVSRNSEFGGIDLSLNRSLEELISSYYEAHGAGIELDEDTRPEEIDAYFVLENYLADMGAI*