Scaffold Ga0105021_1118664

Overview

Basic Information

• Taxon OID: 3300007515
• Scaffold ID: Ga0105021_1118664
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1598
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003515	Metagenome / Metatranscriptome	482	Y
F003706	Metagenome	473	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105021_11186643	F003706	AGGA	MSEVSDVELGKLIQQISTLEVMVKEQNSRLDKLDQQLERTRGIGIGIVLATVGLSGIGGSLFTRWLSGGG*
Ga0105021_11186644	F003515	N/A	NKDIEPKRKQNYTNTSSLIRLELMKRFLIALTAALAAFFTSAQAGPPEGMVRQMIPFPAMCLPATAAQNHFAVLMGALITDYGVHISMTFSSSPDQSQRVVIMENPHNGLAGVLMITDDQSCIAFSGEDRKVFVRPPDHPVGEMNKDTET*