NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105021_1015460

Scaffold Ga0105021_1015460


Overview

Basic Information
Taxon OID3300007515 Open in IMG/M
Scaffold IDGa0105021_1015460 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6413
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)143
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025149Metagenome / Metatranscriptome203Y
F026403Metagenome / Metatranscriptome198Y
F036734Metagenome / Metatranscriptome169N
F046644Metagenome / Metatranscriptome151Y
F070205Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0105021_101546011F036734AGGAGGMANRRFLRSVLTTEPDLDPPEFVDHRAIARRRDQKQEMDYDAYWHDQEMYQEEINTWRMYDQLENSLLELEGK*
Ga0105021_101546013F046644N/AELGIRAVEEVGTVWQDRPFKLQVGNVDVRLSYQELSKIISDADAEIRDYLGEEHV*
Ga0105021_10154603F025149GGAGMVAKKKKPAEKQTFLRPEHKLELLEAINKAWGVCEDSLEVGAPRTDECHDAKHKIRQIACKLGYKQENWYCQFTM*
Ga0105021_10154608F026403AGGMRASYGLERLVKKAQGLERKVEFDLVKTGTTKIETYKNRCLGYIERLGMLTNVSKQDKEVAARKMYKVYFNLQDYEGSEKETDMEVSLESLLPELDMAIVESYAADARTGGLGFSSTRGLMLAEGLSAPKNPYWSAENSVKTQAPMYDPNYVYKPKQDVVQWRKDMKKQKEEVLRGTLQ*
Ga0105021_10154609F070205AGGAGGMSLMKELSIEAEDELRDKIAEALTDYGFTQDDAENLADSCDIPWKLLHDETTDKYTAIIDFAHDSFREP*
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