Scaffold Ga0105020_1066156

Overview

Basic Information

• Taxon OID: 3300007514
• Scaffold ID: Ga0105020_1066156
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2954
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F003020	Metagenome / Metatranscriptome	513	Y
F090847	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105020_10661561	F003020	N/A	MLTKGENNMPDISRFKSVSVSTDTHQKLTNMAAKKFGVAVSVQKVIDYLIEKELKKKNGRSNGKARR*
Ga0105020_10661565	F000720	GAGG	MTLIKENNKVRTELPNRMRSTTFTLPVDDRKVIGIVNYTVNSDGIHPEALWVKIKPTDSYLDRELRASGKLVSRLMQHGESLKDIVDTLSQDNIIGHMVNYFAKNMEDIIMGAPMDKKQRMLSTDPYAMKE*
Ga0105020_10661568	F090847	GGAG	MIDEFEIEWIPEDTGAPYTEVDMTEPSFSEIPAHTVDKLCKKKFGHTNWARLGQMSPEDLVGNPCEIDYTEGIIYFKHKT