Scaffold Ga0105020_1053545

Overview

Basic Information

• Taxon OID: 3300007514
• Scaffold ID: Ga0105020_1053545
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3408
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001625	Metagenome / Metatranscriptome	661	Y
F031648	Metagenome	182	Y
F042932	Metagenome / Metatranscriptome	157	N
F101840	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105020_10535452	F042932	N/A	MADEEYDDRDEITKSSEEEQASYENTVAKSIDTLADVIQSIAESQQGVEKAITDIHDRVKALEKPTDLPLSPKGTQGGDDVGAKVSAPNEPYPVGDQVGLDSDRKNKNPPKKDPSGLKMQEKPVNKAGDSEPEMIQKSEHTFSTETPRPGTALENVDKSLSKDFSPILKDARENGYDGLSVVAQNILSGKYYTPTPEEVGF*
Ga0105020_10535454	F001625	N/A	MAITISSSDWTNANVRKTLSFNAALVSKLRIYSIKVTFGGSDNYATNGVSADLKEGRISTLVAVIPAYTDSKLVVQYDKTNEKIKTFTGSGNGNVLAEVPNNSTLVNSKTFEFLVIGY*
Ga0105020_10535455	F031648	N/A	MVELNHNVVSFNADTVVKGSHGVIVAVFCTKKGSSGAKCQFRNGTTDSATPIEFTIFGEIEGNYQNIHRRFESGIFADITGSAEWTVVFK*
Ga0105020_10535456	F101840	N/A	MATTYCTVEDVADYLRIPITATTVPNKTQIEKIINRKEDELDR