Scaffold Ga0105020_1050046

Overview

Basic Information

• Taxon OID: 3300007514
• Scaffold ID: Ga0105020_1050046
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3568
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005551	Metagenome	397	Y
F005580	Metagenome	396	Y
F058540	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105020_10500465	F005580	N/A	MKNGNKRGNSSMKKAIPHPSVTGMASGLAIASYLNAGERSKSGKVIGEGVIKDITDGQLGEAFGTLSKNAIDMIGSESGRKTLVGASLIAVAGAFARSRFPQLKLGGSKFYFRL*
Ga0105020_10500466	F058540	AGGA	MSEKENPFVKPDVSSPLKKRDSYLVIKEDDPTLVTVDRVDEVKVSTDVGIKDAVRVTCREIITKKVDGEFEFTATEEVKIKESYSTSSWYLLKDFQKASMWPKEGIFYWVWKASDGVRWEEA*
Ga0105020_10500469	F005551	N/A	MVLGPSQSVLRVKDGYIYGWSGSKALTSSAVNLLDYTNPPSFYLTRVMIGIDWSSMGAGEVLSYTVNVDGQGLYVEKFTITDMNLGNQPELFEFVIPPNSTVKIQGTQSANNGAISCILTGYRV*