Scaffold Ga0105020_1034737

Overview

Basic Information

• Taxon OID: 3300007514
• Scaffold ID: Ga0105020_1034737
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4530
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020384	Metagenome / Metatranscriptome	224	N
F024807	Metagenome	204	N
F029468	Metagenome / Metatranscriptome	188	Y
F101007	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105020_10347371	F029468	N/A	MGIGHGTTSTNGVKFEEMTMKVRLKKQAEKDFDKTDVEEKQLALNAACKDFVSEFIDCEGDVFYSTYNKAANSIWQYEQSVKNAAMTKVGPEWDHKAGVVGKWRYPHLRKDDD*
Ga0105020_10347372	F024807	GAGG	MTKRVMPFNLVYHDRDQQLTLALHDNPVTLTRDEVDALVFHLDSFLVDMDDARQPKPSVEGADTHAEAHGEMLMAQFDDDPNPYHGDYSED*
Ga0105020_10347373	F020384	N/A	MRHKKFHSYQKSLQKLRNIVSETLRSSGQGRQIEFDNQMRRAIRHIQIIKRNAPPDANGDLAMVEAYKLYDRLQRLSEYPTFFVDNTRKNPRRVASDRGSDYTHAARPASIRWDAAAMMAVPMSGEDRNWWRPPPRPAPVKHFTQEELENEYPAFTVRKERKDAT*
Ga0105020_10347378	F101007	AGGAG	MSMVVRHPFRNFFSSPFDVDWNEAYKQAMIPEDGAIIVQREWVEKKYRVKHEGDGTIKYIPITEEVVDEPED*