Scaffold Ga0105020_1029272

Overview

Basic Information

• Taxon OID: 3300007514
• Scaffold ID: Ga0105020_1029272
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5063
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia → unclassified Gimesia → Gimesia sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047715	Metagenome	149	N
F059867	Metagenome	133	N
F067816	Metagenome / Metatranscriptome	125	N
F095325	Metagenome	105	N
F099127	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105020_10292721	F059867	N/A	MQLISFRAPREHIVLNTDHPVIMMIKLGCGQNLIQGQTGVAESKIHKALRFPYMISVPDINESQWTTWLIKTPEDEAELDKYFPEFFEDKPKNIRKYKDKPKDIKMVVDYFKEKGIKDPESSAELFYAHYESVGWFKGRSKIKSWRMCLNSWDFKKKGDVQVEQVARPQMYKLECVECGFASETDRKDTRMVCRRCEHRPLMVVTNLIK*
Ga0105020_102927212	F099127	AGGA	LTDSPAYYDLSGDSDRGKLPAGNYDAIIIDMSTVTDIKCGLFIADIFKPVYRVTDGEHKNMEVIDNGIFRYKQVNGYEYESNKNWGFAKFMQLLGTYSKKDGKVNLPYITKSDVSHKRVRITVWDKSFINETSDRISYPVARAVSLINEVPF*
Ga0105020_10292725	F067816	GAG	MDVYYEDKTGSIPAVEVDIILVLADYESANISAPSARREIARAVHRMLLAKNYVTRQKRDSGT*
Ga0105020_10292726	F047715	N/A	VELDMYIDYCPTCTTDKDDPVLLKSYGEAYKDIMSSTVKMEWFMKCPRCEQLFDGGDLYIEREHGLKSRSGIKEY*
Ga0105020_10292729	F095325	AGGA	MKEEQQPDWDNINRGKVRHFFALELYKHKLRNNDKAHLKPTEVGFIEMYVEYVMNGADFREVMKEESALALMSRKECEDIITGRLSDIESVTAEEHTRAIIHLEANGLKDNDLKAVLEALDAGKINQGNLKASIDKINDIKDEYDKE*