Scaffold Ga0105020_1009802

Overview

Basic Information

• Taxon OID: 3300007514
• Scaffold ID: Ga0105020_1009802
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10066
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001625	Metagenome / Metatranscriptome	661	Y
F031648	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105020_100980210	F001625	N/A	MAVTTSTSDWTNANVRKTLSWQAALTSKLRVYKIKVTAGGSDAYATNGVSADLKEQRISTLVAVIPEYTDSTYKVEYDKANEKIKLFTVGGSAGAAFAELANSTSIANKIFEFIVIGY*
Ga0105020_10098029	F031648	N/A	MVEYNHNVVSFNADTAIKGAHGVVVAVFCTKKGSSGAKCILKNGDSSGSAEFTIFGEIEGNYQDINRRFEEGIYADVTGSAEYTVVFK*