Scaffold Ga0105020_1007318

Overview

Basic Information

• Taxon OID: 3300007514
• Scaffold ID: Ga0105020_1007318
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12000
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (64.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007004	Metagenome / Metatranscriptome	360	Y
F009987	Metagenome / Metatranscriptome	310	Y
F045800	Metagenome / Metatranscriptome	152	Y
F067819	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105020_10073182	F045800	AGGGGG	MEDLIAVREYLEAMIEHYKHTSSPVLAERRKTYKDVKIAIFGESEIDDEDTRKENTQAWIC*
Ga0105020_100731820	F067819	AGGAG	MESLFLAWGESQSWWGTLCSVIVIANAITLAVKDQYAEKLPIIGKIWPIMNWLALNVHNNKNAK*
Ga0105020_10073187	F007004	AGGGGG	MKNIMLGICLIVMVGCQTSNAYQRPDVRIVGEAQMKKLDNGNYEVTPRWIKDRFDAENSMLKQLEDCREGGR*
Ga0105020_10073189	F009987	GGA	MFKLMINLIGNALGLGLKIMDKIDKNSDKPSFEEFKGRKKEMDKSLADEDVNGIDSMFEYLAERARAGKTGRKG*