Scaffold Ga0105020_1006945

Overview

Basic Information

• Taxon OID: 3300007514
• Scaffold ID: Ga0105020_1006945
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12400
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (54.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F001625	Metagenome / Metatranscriptome	661	Y
F021393	Metagenome / Metatranscriptome	219	N
F031648	Metagenome	182	Y
F064801	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105020_100694510	F001235	N/A	LATKLNVDTGGEYVGKKLWENHQANEYTRVNNYKEGVCLNCLKVDAVSATIVTICGDCAGKRGREPLLAKVSDKMYGLCYFCGEHKFHIEEINGRFCHPCHRKIADVTKQYNKKGGLFGNPFWERIKKKNGKDWRQIMSQNLGNRR*
Ga0105020_100694516	F021393	N/A	MVEEDNSNTQVEEVSTSNVEKSDNEVEKSFQESVKSGFDTLTEVVQSIAETQKATQETLSGLDNRLKALETPTDLPLTPKGTAASEDVGAKVTVPDTYQSNSVQAGLDDDRSGDKKPSSDKGGLKMQQKSDDTELIEKAEHTFSTETPRPNAALETVDKSFKDESLILKDARANGAEGLSQVARDILAGKYYMPSEDEVGAY*
Ga0105020_100694518	F001625	AGG	MAHTSSTKDWTDANVRKTLSWQAALTSKLRVYKIKVTFGGSDAYATNGVAADLKENRISTLVAVIPEYTDSAYKVEYDKANEKIKLYSVGGSAGAVFAEVANSTSIANKVCEFLVIGY*
Ga0105020_100694519	F031648	N/A	MVEYNHDVVSFNSDTTIKASHGVIVSVYVTKTGSSGSKVVFKNGGSSGTTEFSIFAEQQGTYVGINRRFESGIYADITGDAEYTVVYK*
Ga0105020_10069458	F064801	N/A	MGFKDTLSAFASRFTNKSTTEGTTRPSIATPYMSTDTGAKLPIFPFPLIMIYELADNIDALRIPIETLNREMFKNGFEVVEKWKFKCENCGKEFQYKPIKGDHKDEQPFEQNADNESQSLPRNDAKKAIAHELNESEEMECDTCGSDKLLRPIPENRKKLENLLVNPINGNEQTLEDLARQLERDLEIADNAYCLVLKNYKIDDRTGKINHEQSEVKELLRIDPPQVALIADSDGRIGYDDKRNKVFVCPRFEHRDRRLNVPKCDRCGAEALKAVIEVNSVYSIGIPQPKRVVYGEGEVIWKAGKYKPSLLYGYSPIYSIWSKAMSLSHMDEYIRKYFDKMRPPRGMLVIASRNYETFRKSWDVLEQKATEDPYMIHPLLVESDKGGKNMAQWIDFTGSLKELEFTEIRREIRMIIGAVFGVLPLYFGELPSGWSQEGLQVTITNRAIKWGQDILAQAFLRKFAKLLEVDDWELRLKGGEENDKLRDLQIQGVEIQNMAAMQGMGFEVTRTHTGEFKVSKNPIINPTMMMLESNNDDEKPNTSGSKGRGRGTAAPKEDQQEIDGKPKKQRPSDKGGIGQGAPASGKGTSQSKKADLQPYLEPRRFPDGITPANFEIVKSTLQSAIDFDWTKKKTVDELRTKANMTVRQAREIVKQELADTKRWEEEEF*