Scaffold Ga0105020_1004074

Overview

Basic Information

• Taxon OID: 3300007514
• Scaffold ID: Ga0105020_1004074
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17174
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001711	Metagenome / Metatranscriptome	648	Y
F020921	Metagenome / Metatranscriptome	221	Y
F047687	Metagenome / Metatranscriptome	149	N
F054053	Metagenome / Metatranscriptome	140	N
F073577	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105020_100407414	F020921	AGG	MALPAVPNTNVGMYNHIRVSTDCNETTNLSLASLLNGGAFAYDNSFGAAGGAMKDCDEIGGSNNPLQSTAGSVNLYDDDIGTAPFHISHTIGGTYT*
Ga0105020_100407415	F001711	AGGAG	MAKKIAEKAVESASSPKQVTIKHLRTVKNTAGADVEIVDWEESKDVDSAISQAEAQLVDAEARVTELKADIVEYKKIKG*
Ga0105020_100407420	F047687	N/A	MRAKDIINFTKTNYGQLALHAKGRIVKDMNDGVLQNGVHKYKSKEYAARKATGKLGKHRKAKTGSANRVTMLLSGDTANKITPEGKKDRALLIFLEGDRVEWNEKNNNYIIADLSPKNRDSSALFLQRIVDRNAKKYESKPIKIKIGK*
Ga0105020_100407423	F054053	GAG	MVEFFLGLFLGIILSLFGAMIWGYQLGKKEDELNQQLIKEFQDKAIETHDKRFYKRYES*
Ga0105020_10040743	F073577	AGGAG	MKVKMFKKEWEVNNPTYKEKRELWKLNAMTFDGKNVNQDNYFNLLDKVEEISGLQPEDYINQKGDPINMANIDALLQKIFLSYIGQSDDSKKG*