Scaffold Ga0105020_1003524

Overview

Basic Information

• Taxon OID: 3300007514
• Scaffold ID: Ga0105020_1003524
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18767
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (76.74%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y
F005749	Metagenome	391	Y
F007944	Metagenome / Metatranscriptome	342	Y
F009609	Metagenome	315	Y
F010325	Metagenome / Metatranscriptome	305	Y
F012582	Metagenome / Metatranscriptome	279	Y
F013574	Metagenome / Metatranscriptome	270	Y
F013774	Metagenome / Metatranscriptome	268	Y
F013775	Metagenome	268	Y
F021183	Metagenome	220	Y
F053334	Metagenome	141	Y
F081450	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105020_100352414	F081450	GGAG	MTDFENKACKALGMILFVLVIITWFQISGCSHPVPPPPSDYIDEVDTSNLV*
Ga0105020_100352415	F012582	N/A	MIHWAEENKIRTKRNGDYEIPQRNGVDWKDDFKFVTKLDSMLADGLDVKLKKKEMKMCNELYKYYGSCYDRLRK*
Ga0105020_100352416	F003091	AGGAG	MSTHPRKPITKPGEGNRIQQQKYLSQDRYLEERYKISVGLKGPKRLDGESYEDFQTRRKAENGLLKEYLRGVWVKNED*
Ga0105020_100352417	F053334	AGGAG	MAKKKKSVPFHIQNNYKQYSYKDGGFTITFWAKDDKDAELYRKKVEGK*
Ga0105020_100352421	F005749	AGGAG	MKKSWLLIMSFDEHDGSPNEIKTLYHGRTKRSMVKTMNLFQDMNEHLVLALVEIDKKSTYDKIVDLEESKEMFFMDSKSNWNNGKTYEDLKEEVLEEMLMGSLIKGEMGYA*
Ga0105020_100352423	F013775	GGA	MKQEYETVKELAKDYRAEITPMLKSKGFTLSISTSKGSYWNDGRMNFQIKKVPSNFYVWTHEYNRYSKTEKSQKLLEVIRNRVKAIILESNLDVDLNFDYHKNVRYKPVPDGWDDDDRNY
Ga0105020_100352428	F010325	AGGA	MLRKELVSEKLDQLQLAVERLKSSLVVPTDPDDVGTPIQVVVDQLQGIENQIDQIVNLIELEDD*
Ga0105020_100352430	F013774	N/A	VNDKLLELKRKKLQQQILYLRTELEETQYIFQDCLREFDVEFRKYFKDPIEKNKNDVTSKPPEYDIPEVDVNMVFKKIAQETHPDKLINKDISDEEYDAKVDMYKEAQRSVKNRDWSKVVEIAKELGIDISDIKNDDSEYLNESVKRLTEKIKQLKTTYAWKWGNTPDQEKEIMKGMILQSLGLSQIKEKENGK*
Ga0105020_100352434	F009609	AGGAG	MNIQGKRAKVTKTITSVNGALHEGEVVLIERRENGHWRCRDNMGRIFYLEESNLKVVKK*
Ga0105020_100352441	F007944	N/A	MKMKYWSDYEKYIVMIDGNIGSVRGARLGYQAYLDFKRVKEALIAMSKNDSNYSYDGDIYSRVITASRASQILEKIEECKWDEGIRAVAKQIKAGSMLSPVK*
Ga0105020_10035245	F021183	AGGAG	MPVKSELKVGDWVHVLVVGIKLEGNEPAYQIESIEGEEYSVVQKEGSYEHRMKVKRGKLRKL*
Ga0105020_10035248	F013574	GGAG	MDIDKVIQTLSEAIDDKDWDIIKELLEELIYEDENPIKEYEKDKDIDENLWG*