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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007514 Open in IMG/M |
| Scaffold ID | Ga0105020_1002691 Open in IMG/M |
| Source Dataset Name | Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Georgia Genomics Facility |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 22250 |
| Total Scaffold Genes | 34 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (47.06%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Cariaco Basin, Venezuela | |||||||
| Coordinates | Lat. (o) | 10.5 | Long. (o) | -64.66 | Alt. (m) | Depth (m) | 143 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001066 | Metagenome / Metatranscriptome | 788 | Y |
| F054103 | Metagenome / Metatranscriptome | 140 | Y |
| F064802 | Metagenome / Metatranscriptome | 128 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0105020_100269110 | F054103 | N/A | MRIYFNANNKATLEALESCGIKNVLLSHKYSYENIKRFRPKFESIFMVAGTKGNVDKYHEFLKNKREYYDYAAQFDVFYKMDETLKHLENERKQGIDWTLPVLQENYLQHLSRLRPEPDSYVCLGEVHGKLETEDQVRKLPMNIRYHGLAKGKYIDRRFFESLDTSGWISAAMSKKTEIWNGNSTYSMFFGKKGKQMIPMLRHSCEVYKENLEKIGVKVSDVVDGEYYSLLKLPFALLYMPMLKFYGYYDDNFIN* |
| Ga0105020_100269111 | F001066 | N/A | MAEELFKIEPVGNKDLVTENKRKTISPFNSAKHLKTANIPALCDQCVYRSIEDGGNGKCPKYEKEAVCSIRKDFIDMINTLDTRNPEDLKSMMDMLAKLSFENVLMALTQSKMDGNIPDRNTKSEVNTLLGIVKSINDLNAKIVVTEKTEYRQGDIENIFRQIKAQKSG* |
| Ga0105020_10026919 | F064802 | GAG | MQTEDSIRDLIMYEKEKLLHEPVDQMGMLPQTVIPHEFVDIPDDERRGIIRALRWVLNDENIFQRQ* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |