Scaffold Ga0105020_1000525

Overview

Basic Information

• Taxon OID: 3300007514
• Scaffold ID: Ga0105020_1000525
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54915
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (75.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002593	Metagenome / Metatranscriptome	545	Y
F002682	Metagenome / Metatranscriptome	537	Y
F006000	Metagenome / Metatranscriptome	384	Y
F024924	Metagenome	204	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105020_100052554	F002593	GAGG	MAKFTYSRNGSETTQSIENATPLVKAIWLQAHSFGANIVRVRANETRYGNETGRTFNSFHNGKVSVYRQKDNPNRQDALYFARRVPLTKVNKGMQILEIASNVDVQNTLETIDAIQYYSETSFFGRLWNRIRYGTPMSIKS*
Ga0105020_100052556	F024924	GGAGG	MAGKKRLTKSQRAINSAKAQDIKSAKYRIVVQFNDELKAKRYLKSRGYRYQEVYSHKEDRTLLYKNFKNSWVKLSSTFDYLNDNTMEMGTVWVIETL*
Ga0105020_100052562	F002682	N/A	MSKGKMIGSEEKPITFKSPIYKNAHGSKGANPRPGFYTQDYRDNWERIFGNKNKKESKGHEADEKSKAE*
Ga0105020_100052567	F006000	AGGA	MMNQNARRVIRVTPTITGVTYANNDILFDTTEVPLAVGKPGECSKLVSAMVSSKSNSLFDMELFFCTVNQSMGTVNSARSVSDSDWATAKVLGRLTLDSSADNYNYGNGRIHNFDRQSETYSTTDQWKSRFPVLLQAAAGSTSVYTFAFVAGTDVTPDFSVGDIELVLGVEY*