Scaffold Ga0105020_1000108

Overview

Basic Information

• Taxon OID: 3300007514
• Scaffold ID: Ga0105020_1000108
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 107563
• Total Scaffold Genes: 116
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 95 (81.90%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010790	Metagenome	299	N
F010921	Metagenome / Metatranscriptome	297	Y
F013943	Metagenome	267	Y
F018015	Metagenome / Metatranscriptome	237	Y
F040845	Metagenome / Metatranscriptome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105020_1000108105	F040845	AGGA	MIKLKKLLTEKMSDDKRAFLMLRIYGDSWKINLGKVFSGINKGKPTLIKKGLKEIKILNKKIEEMIEDLI*
Ga0105020_1000108112	F010921	GAGG	MAIKVKGRIKIIEGKAYVHPLTIPELEFLLKIVAEAGHKMEDVPKVLQVTKKLREEYKLVKEHQKT*
Ga0105020_100010873	F010790	GGAG	VIKLKEILEEKVDISDISWNHQKLLKVGGDYIHKARDGRLWYELEDDIKKSKNRTLIKYFKEYDKARLKLQHAGAMLTRAFNMEKR*
Ga0105020_100010876	F013943	GGA	MNIFEQKLWKIINEGSPTGTNSGLGIITGDAWPDGLYTKRGERRYVGPASLTRGMQQVDFPASDNVYGGPDSLNNERRAKRDAGKLYKYLSDPDGHSEIKSDELRDDTPPLSPKQRMYGIHGFHRKQEYTIPPESANFWSTSETLVKPTTPPEGTESGGVPATPEPGSKEMGSASGYRQVNPSGEKVFASNKKLWNKWKDHRLMGAVKGREWKGGKLVDLLPKGVK*
Ga0105020_100010890	F018015	GAGG	MNKKQAFHMNRKWKTFRLDEKLNEENESTWTWIYKGILGGFKKADKKGDASLDAVARGVAFLIKTEFGGGARNDFMKSLKKYIR*