Scaffold Ga0105019_1230050

Overview

Basic Information

• Taxon OID: 3300007513
• Scaffold ID: Ga0105019_1230050
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 878
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 237

Associated Families

Family	Category	Number of Sequences	3D Structure?
F084099	Metagenome	112	Y
F090254	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105019_12300501	F090254	GAGG	MGIEETNYSAIDIVNVVDGAELVTLVREIYLCVWDGGSVVNIYDLTDASRETDYQVLPMFAPRCLLTVHDAIDDYFEALDFDNENEGLTTEPVRVIVKTDWDDPTE
Ga0105019_12300504	F084099	N/A	DIVRMNHALTPERYGLGLVQKIVETQQTFANGGTRLVYHILWPDNTISCQFDTEIVLVGRVK*