Scaffold Ga0105019_1083947

Overview

Basic Information

• Taxon OID: 3300007513
• Scaffold ID: Ga0105019_1083947
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1775
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 237

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001625	Metagenome / Metatranscriptome	661	Y
F031648	Metagenome	182	Y
F064804	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105019_10839473	F031648	GAG	MVELNHNVVSFNADTLIKGSHGVIIAVFCTKKGSSGAKCVFRNGTTSSATPIEFTIFGEIEGNYQNIQRRFETGIYADITGSAEWTVVFK*
Ga0105019_10839474	F001625	N/A	MALTISSSDWTNANVRKTLSFQAALVSKLRIFSVKVTFGGSDNYATNGVSADLKQNRISTLVAVIPTFTDSLHKVEYDKTNEKIKLYTVGGSAGAAFAELANSSTATQSKVFEFLVIGY*
Ga0105019_10839475	F064804	GGAGG	MDERKEHNMVVWQHHDKLAKARDLVIIFLFGSILLETISGIELLGSWWK*