Scaffold Ga0105019_1030286

Overview

Basic Information

• Taxon OID: 3300007513
• Scaffold ID: Ga0105019_1030286
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3524
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 237

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007004	Metagenome / Metatranscriptome	360	Y
F007121	Metagenome / Metatranscriptome	357	Y
F009987	Metagenome / Metatranscriptome	310	Y
F010942	Metagenome / Metatranscriptome	297	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105019_10302862	F010942	GGAGG	VSEQSRESEKKFITIEKDIEHFKYVLNELEKECEFVKNHFTTKNGERLDDIKVLHRRIESHQKTDLEFHENVRKKISEKFDALDARIRQLDKWKWATWGALMVVGALIGNSFPFTLK*
Ga0105019_10302863	F007004	N/A	MIGFCLIVLVGCGTSNAYQQPTVRIVGEAQMKKLPNGNYEVTPRWIKDRFDAENSMLKQLEDCREAR*
Ga0105019_10302864	F009987	GGAG	MLSLIGNALGLGLKIMDKMEKNSDKASFEEFKARKKEMDNSLADSDVEGIDSMFEYLAERARAGKTGRKE*
Ga0105019_10302868	F007121	N/A	MFKTIFLTFFLLFCFVAPVDSAVYYKQHNSDGWQIVLQDEFQEPGLDKLLDWVPEEVPRTVSFYFDINGDGKFDLKIAYSLIEAYPCNKTNCVSRIIDKGDHWVLPAPGINYYVIKKWIMYRYVNDVDWRGEHKTNDFIYKLYDDWLREKFYPLWPEK*