Scaffold Ga0105019_1015483

Overview

Basic Information

• Taxon OID: 3300007513
• Scaffold ID: Ga0105019_1015483
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5645
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 237

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014929	Metagenome / Metatranscriptome	259	Y
F020653	Metagenome	222	Y
F023792	Metagenome / Metatranscriptome	208	Y
F039005	Metagenome / Metatranscriptome	164	Y
F044922	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105019_10154832	F039005	GAG	MHKQKQTLGGSIYSGLQKGLHVGGKIVEYGALAKGIYETGQTLFSIGRAAAPLAAALL*
Ga0105019_10154833	F023792	N/A	MWISGKQIGNAWRQTRGFLKSTYHEGKKWANMIDGYASLFRKGLSAAAPMLQDLGAGEALGSGVKALQSYDTVRKQVMDVDEKGRGHYDRIARAVT*
Ga0105019_10154835	F020653	N/A	MSESIQEIPLDIAEEVQDIVDIAETKAEEEPVILEEVKPVIKPKAKGRPKGALNKGPSKPRAKKTQIQETPVEADETYEPSSPKRNLKLPTDPSSSDVAAAMLKLLQDQSYSRQSRKQRLYNSWFQ*
Ga0105019_10154836	F014929	N/A	MPKKLDKLDHKYNEKLAKIRKNNVERHAGYENTLKLRQNIIKFQRNATYDMELQRLRGATVQGHIAPHAHKRVAELKNILAK*
Ga0105019_10154838	F044922	N/A	MLNRFLPYEKRRAAAAMGFGLASSSENGADHLARPVAANGGEQRVVWRPLSSGVLNSGKLFPGMLLGASGLKITLEVPAASEIARNHANDSQTFSYKDLICHVDSLQLEESISSQYANMLLSGRSIMIPYQTWDNTLQHLTVQTGSQTCNVAKNFTRLASVFTSLAQEEPTVTADLAGVQGKLQNQFYLCDQTAANGDVESFITINNKRMPDFNTIGTQMHMKRLLSAMGTYSSVAHGSNINDVAYGCVKGTAAKSWVAAFDLEKAAHHGASSSGESLATGGILSVNLLKVGSAAASPSRAYINCLYDCVAELKDSGAYIYS*