Scaffold Ga0105019_1014938

Overview

Basic Information

• Taxon OID: 3300007513
• Scaffold ID: Ga0105019_1014938
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5801
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 237

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040391	Metagenome	162	Y
F066145	Metagenome	127	Y
F097139	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105019_10149383	F097139	GGA	MKLLLENWRKYLAEDITPDLEGPTGAIPPHLLKKQNRQKDAKALLKSMGFSVRRELGRGAFGVVYEVENSRTGERSAAKVVSDESKREIENYTFAMEEKAFMPEEYAKYLPDVKQLITGGGSTIILMELLEPLDPQTAQELFAAQDAPTASKKPEKILKDPEAVAEIVERAIEHNRILDQMRLTPEQYSEITSVAVNAATQSPHSDADELINTIYGAVVGALTFQSPAISRAFEKALKDTVLYYFDKQIIPVHQPEEDEDHYDTWTSGGLPKTSALFPEAEGLMDAMKYFMQDKGWKPKDVHINNVMRRPDTKDFVIVDLGLFSRGIYQ*
Ga0105019_10149387	F040391	N/A	MAKKSNSNAELVKRLLKQIAGNVTEDDELIPEVGIYGSGDIWCWDPSARIHRRISRGVKAFVLYENFDIRGRTLIYTHGGDMVCIDPSELLDTGYD*
Ga0105019_10149389	F066145	AGG	MARKKKRIIQPINEVEIINRRTRKFRKINLEDEEIIIYNCQLNEFQLLHPLSASYDENLELPNE