NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105019_1013991

Scaffold Ga0105019_1013991


Overview

Basic Information
Taxon OID3300007513 Open in IMG/M
Scaffold IDGa0105019_1013991 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6084
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)237
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014929Metagenome / Metatranscriptome259Y
F020653Metagenome222Y
F023792Metagenome / Metatranscriptome208Y
F039005Metagenome / Metatranscriptome164Y
F074430Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0105019_10139912F074430GAGGMADRAKALLKKQEQGVNMGEARIHLGRFAKNFAQVQQKARNAEKAASVPPPQKHKTYDDIEKEIEEVVPDPMDTRLRKKPQFPAGAFLKRERLDSEGRKSLRYQGIPIRV*
Ga0105019_10139914F014929N/AMPKKLDKLDHKYNDKLAKIRRANVERHAGYENSLKLRQNIQRFQRNATYDMELRRLRGATSQGHIAPHAHKRVADLKNILGK*
Ga0105019_10139915F020653N/AMPEHILEIPLDVAEEMQDIAEEIPELKPEPPVAEEVKPVIKPKAKGRPKGALNKAQSKPRAKKSRIQEAPVEEESPVYEPSSPKRNLKLPTDPSTSDVAAAMLKLLQDQSYSRQSRKQRLYNSWFQ*
Ga0105019_10139917F023792N/AMWITGKQIGNAWRQTRGFLKSTYHEGRKWANMIDGYASLFRKGLSAAAPMLQDLGAGEALGSGVKVLQSYDTVRKQVMDVDERGREHFGRIARAIT*
Ga0105019_10139918F039005GAGGMHKQTLGNSIYSGLQKGLHIGQKAVEYTALAKGIYETGQTLFSIGRAVAPMAAALL*
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