Scaffold Ga0105019_1012872

Overview

Basic Information

• Taxon OID: 3300007513
• Scaffold ID: Ga0105019_1012872
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6488
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 237

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024125	Metagenome / Metatranscriptome	207	N
F025853	Metagenome / Metatranscriptome	200	Y
F047724	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105019_101287213	F025853	GGA	MKKFLINYIPAVHEGQVNSDNKAYFYRVEIDEQFANRSENDNSAGLAARDTESGLWKRFRFDGIQSAVAI*
Ga0105019_101287214	F024125	N/A	NRFTGKVLTCDQCNAEDSKENEVREWGNPYDHGFICEECDCHET*
Ga0105019_10128726	F047724	N/A	VSEKNITYYRQVFSKDDWAIGLESNDKEYLTRRFWSFWNWKATSGKLDWWTDKFAVFWTDEERFEQAVLDICRTRVLQDIGGETFKGEKGGVDTMAYDLRKEFMANIKDEIFYTHKMRSIELDPHAELQISAENLTDWDAVKA*