Scaffold Ga0105019_1007471

Overview

Basic Information

• Taxon OID: 3300007513
• Scaffold ID: Ga0105019_1007471
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10181
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 237

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009987	Metagenome / Metatranscriptome	310	Y
F010942	Metagenome / Metatranscriptome	297	Y
F092696	Metagenome	107	N
F101352	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105019_100747116	F010942	GAGG	MSEQSRESEKKFIAIEKDIEHLNYVINELEKECEFVKKHFTTKNNERLDDVKVLHGRIESHQKTDLEFHENVRKKISEKFDALDERIRQLDKWKWATWGALMVVGALIGYSFPISIK*
Ga0105019_100747118	F009987	AGGAG	MLGSIIGNALGLGLKIMDKVERNSDKDSFEEFKARKKEMDNTLADADVEGIDSMFEYLADRARAGKTGRKELK*
Ga0105019_100747119	F101352	N/A	LEFWKEEEVAVAEPNITPDDTFAGVDVFKVGDNEYNNCKLGKKKYARWDKYVDVESETGKRITGYAKKHPKKSIIVQHDKTDHMLYLKKFEKGEE*
Ga0105019_10074717	F092696	N/A	MITVFLETGEPLEHKFTLSFDNAKNCTEFKKVVDVGVSFFRLANGGEINYSGSCKKVVASTTIKGSL*