 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007513 Open in IMG/M |
| Scaffold ID | Ga0105019_1004340 Open in IMG/M |
| Source Dataset Name | Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate b |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Georgia Genomics Facility |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16593 |
| Total Scaffold Genes | 34 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (79.41%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Cariaco Basin, Venezuela | |||||||
| Coordinates | Lat. (o) | 10.5 | Long. (o) | -64.66 | Alt. (m) | Depth (m) | 237 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010829 | Metagenome / Metatranscriptome | 298 | Y |
| F020814 | Metagenome / Metatranscriptome | 222 | Y |
| F045695 | Metagenome / Metatranscriptome | 152 | Y |
| F062149 | Metagenome | 131 | Y |
| F084706 | Metagenome / Metatranscriptome | 112 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0105019_100434010 | F045695 | N/A | MKDKRQLFLNIWNKKNSPVRDSIKAKLEVRGIEPTELNCYEYWMGYIKPWADIRGNVHHVNPFRNEAFMRSIGRNKYGTPFKMANRNKKKKRKSRK* |
| Ga0105019_100434012 | F084706 | GGAGG | MKQPEVGTTLGKCVFDNGVIVEGQSIRSQYATLRSGRWICGECLLDMLPIALEATQSRMLEEAEKRDKLIAEVKKYGWSVNPDTGKLEKL* |
| Ga0105019_100434015 | F010829 | GAG | MGNLADHNRLREEQGLYKEDPGTGTYTKDEMDYIPFLGKNPTDERPAVYTARFKVSDGIIELEAKRSGGKLYLTCLADEKHNRALFECVDRFVAAIFDGTAREIREAQPEDSEIMKLKKHIEQLEKENEEHIETLVKLKSIME* |
| Ga0105019_100434018 | F062149 | GGAG | VTEIKDKLDEEAEQRERWIKLLRAGYMFHQQEVRETENPIIGAEPSDINLFHKALSVAIQDAIELIQQMEAYGFFDEELSTPGMAG* |
| Ga0105019_10043408 | F020814 | GAG | MGRSKGNLGRRVPTYIGNPPNKEIYPEWWEDEENLMRLNPSYPQRKALIRRKHEQKKQQKSK* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |